A cluster model for cell death, where a cluster is indexed by a tuple (L, X, Y, Z), where L represents FasL and X, Y, and Z are three posited forms of Fas, denoting closed, open and unstable, and open and stable, i.e., active and signaling, receptors, respectively [Feliu, Wiuf].
i1 : clusterModelCellDeath() o1 = Y+Z-->2Z Y+Z+L-->2Z+L 2Y-->Y+Z 2Y-->2Z 2Y+L-->Y+Z+L 2Y+L-->2Z+L Y+2Z-->3Z Y+2Z+L-->3Z+L 2Y+Z-->Y+2Z 2Y+Z-->3Z 2Y+Z+L-->Y+2Z+L 2Y+Z+L-->3Z+L 3Y-->Y+2Z 3Y-->3Z 3Y-->2Y+Z 3Y+L-->Y+2Z+L 3Y+L-->3Z+L 3Y+L-->2Y+Z+L o1 : ReactionNetwork |
In this example n=m=3. To rename species, use substitute(ReactionNetwork,List).
The object clusterModelCellDeath is a method function.