ReactionNetwork -- a mutable hash table, stores information about a reaction network
Functions and methods returning an object of class ReactionNetwork :
Methods that use an object of class ReactionNetwork :
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"conservationEquations(ReactionNetwork)" -- see conservationEquations -- creates the conservation equations of a reaction network
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"conservationEquations(ReactionNetwork,Ring)" -- see conservationEquations -- creates the conservation equations of a reaction network
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conservationEquations(ReactionNetwork,InexactFieldFamily) (missing documentation)
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createConcentrationRates(ReactionNetwork) (missing documentation)
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createInitialValues(ReactionNetwork) (missing documentation)
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createReactionRates(ReactionNetwork) (missing documentation)
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"createRing(ReactionNetwork)" -- see createRing -- creates a ring with generators species concentrations, reaction rates, initial values
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"createRing(ReactionNetwork,Ring)" -- see createRing -- creates a ring with generators species concentrations, reaction rates, initial values
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createRing(ReactionNetwork,InexactFieldFamily) (missing documentation)
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"glue(List,ReactionNetwork)" -- see glue -- combine two networks
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"glue(ReactionNetwork,List)" -- see glue -- combine two networks
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"glue(ReactionNetwork,ReactionNetwork)" -- see glue -- combine two networks
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"negativeLaplacian(ReactionNetwork)" -- see negativeLaplacian -- Computes the negative of the Laplacian matrix of a Reaction Network.
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"negativeUndirectedLaplacian(ReactionNetwork)" -- see negativeUndirectedLaplacian -- Computes the negative of the Laplacian matrix of an undirected graph associated with a Reaction Network.
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"negativeWeightedLaplacian(ReactionNetwork)" -- see negativeWeightedLaplacian -- Computes the negative of the weighted Laplacian matrix of a Reaction Network.
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net(ReactionNetwork) (missing documentation)
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"reactantMatrix(ReactionNetwork)" -- see reactantMatrix -- Computes the reactants matrix of a Reaction Network.
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reactionMatrix(ReactionNetwork) (missing documentation)
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"steadyStateEquations(ReactionNetwork)" -- see steadyStateEquations -- creates steady-state equations of a reaction network
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"steadyStateEquations(ReactionNetwork,Ring)" -- see steadyStateEquations -- creates steady-state equations of a reaction network
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steadyStateEquations(ReactionNetwork,InexactFieldFamily) (missing documentation)
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"stoichiometricConeKer(ReactionNetwork)" -- see stoichiometricConeKer -- Computes a matrix whose columns are the rays of the cone non-negative kernel of the stoichiometric matrix of a Reaction Network.
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"stoichiometricMatrix(ReactionNetwork)" -- see stoichiometricMatrix -- Computes the stoichiometric matrix of a Reaction Network.
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"stoichiometricSubspace(ReactionNetwork)" -- see stoichiometricSubspace -- Computes the stoichiometric space of a Reaction Network.
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"stoichSubspaceKer(ReactionNetwork)" -- see stoichSubspaceKer -- Computes the kernel of the stoichiometric matrix of a Reaction Network.
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subRandomInitVals(ReactionNetwork) (missing documentation)
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subRandomInitVals(ReactionNetwork,Ring) (missing documentation)
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subRandomReactionRates(ReactionNetwork) (missing documentation)
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subRandomReactionRates(ReactionNetwork,Ring) (missing documentation)
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substitute(ReactionNetwork,List) -- substitute species names in reaction network